as.templatebrain: Use image file or other object to initialise template brain

In jefferislab/nat.templatebrains: NeuroAnatomy Toolbox ('nat') Extension for Handling Template Brains

Use image file or other object to initialise template brain

Description

Use image file or other object to initialise template brain

Usage

as.templatebrain(x, ...)

## S3 method for class 'character'
as.templatebrain(x, ...)

## S3 method for class 'im3d'
as.templatebrain(x, regName = NULL, name = regName, ...)

## S3 method for class 'templatebrain'
as.templatebrain(x, ...)

Arguments

x	object used to construct the templatebrain, either a character vector with the path to a file or an im3d object.
...	additional named arguments passed to methods and then on to templatebrain that will be added as fields to the templatebrain object.
name, regName	name and short name of the template brain. Will use the filename (minus final extension) by default for both fields.

Details

as.templatebrain can extract the key fields defining an template space from an image file. This is generally a much more convenient approach to defining a templatebrain object than specifying all fields by hand.

Value

A list with class templatebrain

See Also

templatebrain, im3d

Examples

# Make templatebrain object using image info from the template brain NRRD file
nhdr=system.file('images','FCWB.nhdr', package='nat.templatebrains')
as.templatebrain(nhdr, name = "FlyCircuit Whole Brain")

jefferislab/nat.templatebrains documentation built on Aug. 21, 2023, 11:22 a.m.