| clusterFusionEnds | Cluster and annotate a fusion end list |
| clusterFusions | Cluster fusions |
| FusionClust | FusionClust - Cluster fusions |
| fusionGaps | Fusion endpoint spacings |
| hello | Hello boilerplate function |
| loadBedCoverage | Load a bed per-base coverage file |
| mergeCountsByCluster | Merge fusion site counts by cluster |
| orderFusionEnds | Order fusion ends in the cohort. |
| readAbraSv | Read an abra.sv file |
| readVirusCounts | Load virus count file |
| sortFusions | Sort fusions |
| writeAbraSv | Write an abra.sv file |
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