As of the specified release, this idea was actively being developed. It should be availalbe with the next release unless noted otherwise, but there is a good chance that one or more will get bumped down the road come release time.
As of the specified release, this idea was accepted for implementation. It is not yet underway, and there is no promise that it will be available soon. But eventually...
As of the specified release, these idea was added for consideration. It has not been decided if this should be done or not. These will eventually migrate to accepted, underway, or rejected
cwlParse("tool.cwl")
- A function to parse a tool.cwl file into an S3 cwlToolObj
object that represents it. This object is composed of other objects. Intended for use with data by some command runner.cwlParse("data.yml")
- A function to parse a data.yml file and return a cwlDataObj
object that represents it.cwlCommand(tool, data)
- A function to return a command line that can
be executed to run the tool as specified by the data.cwlRun(tool, data)
- A function to run a tool as specified by data.As of the specified release, it was decided that this will likely never be done.
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