| calcul_e | Calculation of the value of epsilon |
| control_adjustment | Calculates a corrected control group, discovers outliers in... |
| generate_correlation | Generates different distance matrices |
| hyperrectangle_deviation_assessment | Calculation of deviation components |
| make_matrices | Prepares the matrices for 'control_adjustment' |
| make_matrices-methods | Prepares the matrices for 'control_adjustment' |
| ttmap | Visualisation of the clustering |
| TTMap-package | Two-Tier Mapper: a clustering tool based on topological data... |
| ttmap_sgn_genes | Gives a list of associated genes per cluster |
| write_pcl | Reading, writing and annotation files |
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