snpG: Simulated genotype scores of 26 SNPs in the IL2RA gene for...
In jennasimit/MTFMextra: Specific Analyses for MFM package
Description
Simulated genotype scores of 26 SNPs in the IL2RA gene for 100,000 individuals from the same population (CEU) ' ' This dataset was
simulated using hapgen2 (http://mathgen.stats.ox.ac.uk/genetics_software/hapgen/hapgen2.html) and the 1000 Genomes CEU, version 3
reference panel data (ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/). Code details ' are provided in the MFMextra vignette.
This data is an example of input to the MFMextra functions phen.gen.fn and phen.gen.t2null.fn, which simulate two diseases with a shared
set of controls; phen.gen.t2null.fn simulates no associations with disease 2.
Usage
1
Format
A matrix with 26 rows (SNPs) and 100,000 columns (individuals).
jennasimit/MTFMextra documentation built on May 22, 2019, 12:37 p.m.
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Description
Simulated genotype scores of 26 SNPs in the IL2RA gene for 100,000 individuals from the same population (CEU) ' ' This dataset was simulated using hapgen2 (http://mathgen.stats.ox.ac.uk/genetics_software/hapgen/hapgen2.html) and the 1000 Genomes CEU, version 3 reference panel data (ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/). Code details ' are provided in the MFMextra vignette. This data is an example of input to the MFMextra functions phen.gen.fn and phen.gen.t2null.fn, which simulate two diseases with a shared set of controls; phen.gen.t2null.fn simulates no associations with disease 2.
Usage
1 |
Format
A matrix with 26 rows (SNPs) and 100,000 columns (individuals).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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