plot_AclustsCCA: Creates a heatmap of significant CpG sites/Genes and...

In jennyjyounglee/AclustsCCA: A Cluster Based Sparse Canonical Correlation Analayis to Test Associations Between A Multi-Pollutant Mixture and High-Dimentional DNA Methylation

Creates a heatmap of significant CpG sites/Genes and exposures

Description

This function creates a heatmap of significant CpG sites/Genes and exposures

Usage

plot_AclustsCCA(obj, annot, abs = TRUE)

Arguments

obj	Output of AclustsCCA
annot	A preloaded annotation file that includes columns the below name. For more information, IlluminaHumanMethylation450kanno.ilmn12.hg19. IlmnID: a character vector of IlmnID CHR: a numeric vector of chromosome containing the CpG Coordinate_37: a numeric vector of chromosomal coordinates of the CpG Islands_Name: a character vector of chromosomal coordinates of the CpG Island Relation_to_Island: a character vector of the location of the CpG relative to the CpG island UCSC_RefGene_Name: a character vector of Target gene name(s)
abs	A logical flag for showing absolute value of loadings or not

Value

A heatmap of significant CpG sites/Genes and exposures where columns are CpG sites/Genes and rows are exposures. Selected exposures are colored otherwise remains white.

jennyjyounglee/AclustsCCA documentation built on June 15, 2022, 7:45 p.m.