Files in jesse-smith/covidModel
COVID-19 Modeling Tools for Shelby County Health Department
.Rbuildignore
.github/.gitignore
.github/CODE_OF_CONDUCT.md
.github/CONTRIBUTING.md
.github/ISSUE_TEMPLATE/issue_template.md
.github/SUPPORT.md
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/pr-commands.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/bsts_fit.R
R/bsts_regression.R
R/bsts_season.R
R/bsts_trend.R
R/calc_active_cases.R
R/class-bsts_season.R
R/class-bsts_trend.R
R/class-covidmodel_bsts.R
R/class-covidmodel_rt.R
R/covidModel-package.R
R/cv_decomposition.R
R/deanomalize.R
R/estimate_activity.R
R/estimate_boosted_rt.R
R/estimate_delay.R
R/estimate_rt.R
R/estimate_unboosted_rt.R
R/gamma-distr.R
R/integrate.R
R/model.R
R/nowcast.R
R/plot.R
R/prep_linelist.R
R/simulate_infections.R
R/sirv.R
R/utils-coviData.R
R/utils-magrittr.R
R/utils-tidyeval-symbols.R
R/utils-vctrs.R
R/zoo.R
README.md
_pkgdown.yml
codecov.yml
covidModel.Rproj
dev/bsts_decomp.R
dev/script - model_hospital.R
dev/script - model_icu.R
dev/script - sirv.R
dev/script - sirv_analysis.R
dev/script - sirv_jtf.R
dev/shelby_v_uk.R
figs/Hplot_2021-08-17.png
figs/Hplot_2021-08-24.png
figs/ICUplot_2021-08-24.png
figs/archive.zip
figs/rt_plot2021-06-16.png
figs/rt_table_2021-06-16.png
man/bind_boosted_rt.Rd
man/boost_rt.Rd
man/bsts_fit.Rd
man/bsts_season.Rd
man/bsts_trend.Rd
man/calc_active_cases.Rd
man/calibrate_rt.Rd
man/clean_linelist.Rd
man/coviData-helpers.Rd
man/covidModel-package.Rd
man/cv_decomposition.Rd
man/cv_linelist_decomposition.Rd
man/cv_rt.Rd
man/deanomalize.Rd
man/estimate_activity.Rd
man/estimate_boosted_rt.Rd
man/estimate_delay.Rd
man/estimate_rt.Rd
man/estimate_unboosted_rt.Rd
man/expm1_decomposed.Rd
man/figures/logo.png
man/functionalize.Rd
man/gamma-distr-conversion.Rd
man/interpolate.Rd
man/interpolate_vec.Rd
man/magrittr-helpers.Rd
man/nowcast_cases.Rd
man/nowcast_tests.Rd
man/plot_rt.Rd
man/prep_linelist.Rd
man/prep_linelist_decomposition.Rd
man/reduce_rt_error.Rd
man/reexports.Rd
man/rgamma_vec.Rd
man/sample_rt_error.Rd
man/sirv.Rd
man/sirv_fn.Rd
man/summarize_rt_error.Rd
man/tidy_rt.Rd
man/utils-tidyeval-symbols.Rd
man/validate_decomposition.Rd
man/validate_rt.Rd
man/vctr-helpers.Rd
man/vec_fun.Rd
man/weight_rt_error.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
scripts/script - model_rt.R
tests/testthat.R
tests/testthat/test-dummy.R
