tests/testthat/_snaps/calc_dist.md

In jesse-smith/covidscreen: COVID-19 Asymtomatic Screening Strategy Assessment

cs_dist() output has not changed

Code
  cs_dist()
Output
                 p   vac   inf  symp  test detect
   1: 0.0035416667  TRUE  TRUE  TRUE  TRUE   TRUE
   2: 0.0006250000  TRUE  TRUE  TRUE  TRUE  FALSE
   3: 0.0000000000  TRUE  TRUE  TRUE FALSE   TRUE
   4: 0.0000000000  TRUE  TRUE  TRUE FALSE  FALSE
   5: 0.0000000000  TRUE  TRUE FALSE  TRUE   TRUE
   6: 0.0000000000  TRUE  TRUE FALSE  TRUE  FALSE
   7: 0.0000000000  TRUE  TRUE FALSE FALSE   TRUE
   8: 0.0125000000  TRUE  TRUE FALSE FALSE  FALSE
   9: 0.0000000000  TRUE FALSE  TRUE  TRUE   TRUE
  10: 0.0000000000  TRUE FALSE  TRUE  TRUE  FALSE
  11: 0.0000000000  TRUE FALSE  TRUE FALSE   TRUE
  12: 0.0000000000  TRUE FALSE  TRUE FALSE  FALSE
  13: 0.0000000000  TRUE FALSE FALSE  TRUE   TRUE
  14: 0.0000000000  TRUE FALSE FALSE  TRUE  FALSE
  15: 0.0000000000  TRUE FALSE FALSE FALSE   TRUE
  16: 0.4833333333  TRUE FALSE FALSE FALSE  FALSE
  17: 0.0070833333 FALSE  TRUE  TRUE  TRUE   TRUE
  18: 0.0012500000 FALSE  TRUE  TRUE  TRUE  FALSE
  19: 0.0000000000 FALSE  TRUE  TRUE FALSE   TRUE
  20: 0.0000000000 FALSE  TRUE  TRUE FALSE  FALSE
  21: 0.0030357143 FALSE  TRUE FALSE  TRUE   TRUE
  22: 0.0005357143 FALSE  TRUE FALSE  TRUE  FALSE
  23: 0.0000000000 FALSE  TRUE FALSE FALSE   TRUE
  24: 0.0214285714 FALSE  TRUE FALSE FALSE  FALSE
  25: 0.0000000000 FALSE FALSE  TRUE  TRUE   TRUE
  26: 0.0000000000 FALSE FALSE  TRUE  TRUE  FALSE
  27: 0.0000000000 FALSE FALSE  TRUE FALSE   TRUE
  28: 0.0000000000 FALSE FALSE  TRUE FALSE  FALSE
  29: 0.0000000000 FALSE FALSE FALSE  TRUE   TRUE
  30: 0.0666666667 FALSE FALSE FALSE  TRUE  FALSE
  31: 0.0000000000 FALSE FALSE FALSE FALSE   TRUE
  32: 0.4000000000 FALSE FALSE FALSE FALSE  FALSE
                 p   vac   inf  symp  test detect

cs_dist() works with partial args

Code
  data
Output
                 p   vac   inf  symp  test detect
   1: 0.0069416667  TRUE  TRUE  TRUE  TRUE   TRUE
   2: 0.0012250000  TRUE  TRUE  TRUE  TRUE  FALSE
   3: 0.0000000000  TRUE  TRUE  TRUE FALSE   TRUE
   4: 0.0000000000  TRUE  TRUE  TRUE FALSE  FALSE
   5: 0.0042145833  TRUE  TRUE FALSE  TRUE   TRUE
   6: 0.0007437500  TRUE  TRUE FALSE  TRUE  FALSE
   7: 0.0000000000  TRUE  TRUE FALSE FALSE   TRUE
   8: 0.0148750000  TRUE  TRUE FALSE FALSE  FALSE
   9: 0.0002016000  TRUE FALSE  TRUE  TRUE   TRUE
  10: 0.0065184000  TRUE FALSE  TRUE  TRUE  FALSE
  11: 0.0000000000  TRUE FALSE  TRUE FALSE   TRUE
  12: 0.0000000000  TRUE FALSE  TRUE FALSE  FALSE
  13: 0.0049896000  TRUE FALSE FALSE  TRUE   TRUE
  14: 0.1613304000  TRUE FALSE FALSE  TRUE  FALSE
  15: 0.0000000000  TRUE FALSE FALSE FALSE   TRUE
  16: 0.4989600000  TRUE FALSE FALSE FALSE  FALSE
  17: 0.0059500000 FALSE  TRUE  TRUE  TRUE   TRUE
  18: 0.0010500000 FALSE  TRUE  TRUE  TRUE  FALSE
  19: 0.0000000000 FALSE  TRUE  TRUE FALSE   TRUE
  20: 0.0000000000 FALSE  TRUE  TRUE FALSE  FALSE
  21: 0.0020642857 FALSE  TRUE FALSE  TRUE   TRUE
  22: 0.0003642857 FALSE  TRUE FALSE  TRUE  FALSE
  23: 0.0000000000 FALSE  TRUE FALSE FALSE   TRUE
  24: 0.0145714286 FALSE  TRUE FALSE FALSE  FALSE
  25: 0.0000828000 FALSE FALSE  TRUE  TRUE   TRUE
  26: 0.0026772000 FALSE FALSE  TRUE  TRUE  FALSE
  27: 0.0000000000 FALSE FALSE  TRUE FALSE   TRUE
  28: 0.0000000000 FALSE FALSE  TRUE FALSE  FALSE
  29: 0.0011710286 FALSE FALSE FALSE  TRUE   TRUE
  30: 0.0378632571 FALSE FALSE FALSE  TRUE  FALSE
  31: 0.0000000000 FALSE FALSE FALSE FALSE   TRUE
  32: 0.2342057143 FALSE FALSE FALSE FALSE  FALSE
                 p   vac   inf  symp  test detect

Code
  attrs
Output
  $names
  [1] "p"      "vac"    "inf"    "symp"   "test"   "detect"

  $class
  [1] "data.table" "data.frame"

  $row.names
   [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
  [26] 26 27 28 29 30 31 32

  $params
  $params$vac
  $params$vac$p_comm
  [1] 0.5

  $params$vac$eff
  [1] 0.5

  $params$vac$p_org
  [1] 0.7


  $params$inf
  $params$inf$p_incid
  [1] 0.005

  $params$inf$t_presymp
  [1] 5

  $params$inf$t_symp
  [1] 7


  $params$symp
  $params$symp$p_inf_vac
  [1] 0.5

  $params$symp$p_inf_unvac
  [1] 0.5

  $params$symp$p_uninf
  [1] 0.01


  $params$test
  $params$test$p_symp
  [1] 1

  $params$test$p_asymp_unvac
  [1] 0.1428571

  $params$test$p_asymp_vac
  [1] 0.25


  $params$detect
  $params$detect$sens
  [1] 0.85

  $params$detect$spec
  [1] 0.97

jesse-smith/covidscreen documentation built on June 15, 2022, 7:46 p.m.