IDseq_barcode_count: Count the number of unique UMI per Barcode_1 and Barcode_2...
In jessievb/IDseq: Split barcoded FASTQ files and analyse data from the IDseq method
View source: R/barcode_count.R
Description
Count the number of unique UMI per Barcode_1 and Barcode_2 columns.
The data table that should be used is the IDseq_UMI_count table, which
contains all the unique (collapsed) UMI,
barcode_1 and barcode_2 information. The column row_occurence_count can be
ignored.
Usage
1
2
IDseq_barcode_count(UMI_count_tbl = UMI_count,
output_filename = "output/data/barcode_count")
jessievb/IDseq documentation built on July 5, 2021, 9:04 p.m.
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View source: R/barcode_count.R
Description
Count the number of unique UMI per Barcode_1 and Barcode_2 columns. The data table that should be used is the IDseq_UMI_count table, which contains all the unique (collapsed) UMI, barcode_1 and barcode_2 information. The column row_occurence_count can be ignored.
Usage
1 2 | IDseq_barcode_count(UMI_count_tbl = UMI_count,
output_filename = "output/data/barcode_count")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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