find_peaks: find_peaks
In jf15558/FAU.JFS: What the Package Does (One Line, Title Case)

Function to scan, column-wise, a matrix of per-taxon observation density time series. This can be applied to either the histogram or the kernel density output of densify, but the latter is recommended. Peaks are detected as local maxima, then smoothed within a local window and tested to distinguish if they are noise or significant. Strict threshold is that the peak is greater than the mean + sd of the window

1	find_peaks(x, win = 5, verbose = TRUE)

`x`	A matrix as outputed by `densify`
`win`	A positive integer specifying the window length on either side of a peak (i.e. win 5 will give a total window of 11 - -5 indices + peak index + 5 indices)
`verbose`	A logical determining if function progress should be reported

A list of four, the first three positions containing lists of the peak indices for each taxon, under raw, mean + sd and mean detection regimes. The fourth item is a dataframe of counts of peaks per taxon, 1 row per taxon, 1 column per detection regime

jf15558/FAU.JFS documentation built on Jan. 21, 2022, 6:52 a.m.