consensus: Calculate consensus segments from a list of segmentation...

In jfallmann/consseg: Weighted Reconciliation of Segmentations

Description

Calculate consensus segments from a list of segmentation breakpoints

Usage

consensus(
  b,
  n,
  w,
  e,
  return = "breakpoints",
  store = FALSE,
  test = FALSE,
  verb = 1
)

Arguments

b	list of breakpoints of different segmentations or a data.frame of segments with "start", "end" and "type columns", or a segmenTier results object of class "segments".
n	total sequence length (max(b) if not provided).
w	weights vector, must sum up to 1 or will be normalized.
e	potential function either a XPtr pointer to a function pre-compiled with compileEquation or a string of a (C++-compatible) mathematical equation using L for the interval length and n for the total sequence length to calculate potentials during the consseg recursion, eg. "(L/n)*log(L/n)" to use the negentropy.
return	return class, simple "breakpoints" or "segments", where breakpoints are considered the start, and ends are cut one before.
store	for debugging: store and return all internal vectors.
test	for debugging.
verb	verbosity level, 0 is silent.

jfallmann/consseg documentation built on March 16, 2021, 11:34 a.m.