NEWS.md

In jfisher-usgs/Trends: Trend Analysis of Monitoring Network Data

Trends 1.1.2.9000

• ...

Trends 1.1.2

• Minor changes for compiling with R version 3.5.2.

Trends 1.1.1

• Edit CITATION file

• Update URL links to HTTP Secure

Trends 1.1.0

• Change to in-source documentation using roxygen2 package.

Trends 1.0.0

• Change repository for package installation to https://jfisher-usgs.github.io/R

• Minor changes for compiling with R version 3.3.0.

• Change format for package version numbering from #.#-# to #.#.#

Trends 0.2-1

• Additional explanatory variables (such as seasonality and water levels) may be added as covariants in the trend model.

Trends 0.2-0

• This version represents a major change in the package and breaks compatibility with older versions. The impetus for this change was a need to model interval-censored data. A parametric survival regression model is fit to the observed data, both censored and uncensored.

Trends 0.1-5

• Fixed bug in RunTrendAnalysis function that dropped matrix class for spatial data frames with a single coordinate value.

• Fixed bug in RunTrendAnalysis function that tried to compute trend when summary statistics returned from NADA::cenfit function were incomplete.

• Added a package CITATION file and a LaTeX bibliography source file.

• Added argument in MergePDFs function to remove individual files after merge is completed.

Trends 0.1-4

• Added a package vignette describing 2014 water quality data processing.

• Summary statistics are written to a shapefile.

• Added new functions for reading configuration files (ReadParConfig and ReadPlotConfig) and a geo-referenced site location file (ReadSiteLocations).

• The 'Min', 'Max', 'Start_date', and 'End_date' fields have been removed from the plot configuration files. Users need to update their input files to account for this change.

• Graphics now opened in a platform-independent way using the grDevices::dev.new function.

• Many of the function names were updated using a more explicit naming convention.

• The tcltk package is no longer required. Removed Tcl/Tk dialog boxes for file and directory selection. Default directory arguments are the working directory and file path names must be passed as arguments.

• Fixed calculation of the number of samples above the reporting limit (n_above_rl); previous value did not include the number of estimated (E) samples.

• Plot legends show "p-value < 0.001"; previously these labels were shown as "p-value = 0.000".

• Nonparametric regression is prevented when NADA::cenfit function results in warnings.

• Warn if site ids in configuration files do not match ids in the data file.

• Added a new function MergePDFs, combines PDF files into a new file.

jfisher-usgs/Trends documentation built on May 19, 2019, 7:16 a.m.