NEWS.md

In jfrancoiscollin/ClinReport: Statistical Reporting for Scientific Publications, Epidemiological Studies and Clinical Trials

ClinReport 0.9.1.6

Enhancement

• Deprecated arguments (x1.name, x2.name, x3.name) in report.lsmeans function it's now replaced by x1, x2 and x3 so it's consistent with report.quanti and report.quali

• It's now possible to export anova tables in report.doc function (see examples in report.doc)

• It's now possible to export a ggplot corresponding to a desc object. It can be a quali, quanti or lsmeans desc object so the corresponding graphics are barplot or lineplot with or without confidence intervals (see examples in report.doc function).

Issues

• The code has been cleaned (no more eval(parse(text=...)) )
• Suppressed some recursive calls

ClinReport 0.9.1.7

Enhancement

• Add the font.size option

ClinReport 0.9.1.8

Issues

• Corrected the code of report.lsmeans which reported systematically in response values the lsmeans of GLM models

Enhancement

• Add the add.mad option in report.quanti so the mad is not systematically reported

ClinReport 0.9.1.9

Issues

• Correction of nbcol argument when x2=NULL and x1!=NULL in report.quali function
• Correction of a footnote issue for ls-means reporting of GLM model

Enhancement

• function report.quanti: stop using group_by_: replaced by group_by
• function report.quanti: remove the funs_ in summarise_at
• Add a vignette in the package
• Add a footer_row and hline to all report.doc outputs

ClinReport 0.9.1.10

Issues

• correction of report.lsmeans: always updated the results to type="response"

Enhancement

• check in report.quanti and report.quali if the variables are factors or numeric and return a message if they are not (eventually transform character variables into factors)

ClinReport 0.9.1.11

Enhancement

• Add the add.stat function to add a specific statistic in report.quanti function
• Improve the regroup function to regroup two quantitative desc object
• Improve the report.quanti function so it's now possible to not systematically have the default statistics. The user can now implement it's own statistics using argument func.stat and func.stat.name.
• Complete the vignettes

ClinReport 0.9.1.12

Issues

• correction of add.stat: when subjid=NULL add.stat didn't work
• correction in report.quanti: if default quantitative stat were integer, the correct number of digits was not homogeneous
• correction in report.quanti: total column was not rounded properly, it was always 2 digits
• correction: spacetable function, reordered lexically the at.row factor: corrected

Enhancement

• Can regroup more than 2 desc object with the function regroup
• the vertical lines are splitted in report.doc if the at.row argument is filled it adds more readability to the output
• the horizontal line under the colspan value underline only the levels of colspan levels it adds more readibility to the doc

ClinReport 0.9.1.13

Enhancement

• The reporting of LS-Means has been much simplified so now most of the old arguments are deprecated
• The reporting of Cox model hazard ratios has been added to the report.lsmeans function
• The print of the tables has been improved
• Minor bugs have been corrected

ClinReport 0.9.1.14

Enhancement

• Add drop.y, drop.x1 and drop.x2 arguments in report.quanti and report.quali to drop levels from the results if needed
• Add the transpose argument in report.lsmeans function to show the statistics in columns or in rows
• Add the report.modelinfo function, to export in a table the information relative to a statistical model (the call to the model, the package name, the function name, the AIC, BIC, number of observation etc...)
• If x2 argument is not missing then at.row argument automatically will space the results by row, no need to fill this argument systematically anymore
• The title is automatically filled with y.label argument
• Add the remove.missing argument in report.quali to be able to compute the percentage on non missing values only if needed
• Add transpose function
• Add hierarchical descriptive statistics for reporting Adverse Event, Medical History and concomitant treatment
• Add report.sessionInfo to export to Word or R markdown do, the sessionInfo of R
• Add report.doc.anova.lme function, so that results from anova() function can be exported

Issues

• Correction of a bug in report.quanti when x1 and x2 arguments were NULL

ClinReport 0.9.2

Enhancement

• A Word template is integrated in the package and the function init.report enables to initialize the default parameters (Date, Author name, Title of the report etc...)
• The package is now compatible with tibble object and is compatible with the haven package
• The package can use SAS format to re-label the outputs automatically
• Add pvalue argument to report.doc.anova to have a pretty round format in the anova table
• New apply.format function for tibble objects
• Enable the row binding of two qualitative objects (regroup function)

Issues

• Correction of a bug in report.quanti when using the func.stat argument

ClinReport 0.9.3

Issues

• shell.exec removed from examples

ClinReport 0.9.4

Enhancement

• model info on linear models

jfrancoiscollin/ClinReport documentation built on Sept. 20, 2020, 7:33 a.m.