interactive_biplot: Interactive biplot

In jfukuyama/localBiplots: Local biplots for multi-dimensional scaling

Interactive biplot

Description

Interactive biplot

Usage

interactive_biplot(
  X,
  dist,
  dist_deriv = NULL,
  k = 2,
  sample_data = NULL,
  sample_mapping = aes_string(x = "Axis1", y = "Axis2"),
  sample_facet = NULL,
  var_data = NULL,
  var_mapping = aes_string(x = "Axis1", y = "Axis2"),
  layout = c(6, 6),
  width = 600,
  res = 90
)

Arguments

X	A data matrix, samples as rows.
dist	Either a string describing one of the supported distances or a function that takes a matrix and returns the distances between the rows of the matrix.
dist_deriv	Either NULL (if dist is a string describing one of the supported distances) or a function that takes two vectors and computes \frac{\partial}{\partial y_j}d(x,y).
k	The number of embedding dimensions.
sample_data	A data frame, containing extra information about the samples to be appended to the embeddings for plotting.
sample_mapping	The output from aes_string. Defaut is aes_string(x = "Axis1", y = "Axis2"); add in additional aesthetics to map variables in sample_data. in sample_data.
sample_facet	Output from facet_grid or facet_wrap. Can facet on variables in sample_data.
var_data	A data frame, containing extra information about the variables to be appended to the local biplot axes for plotting.
var_mapping	The output from aes_string. Default is aes_string(x = "Axis1", y = "Axis2"); add in additional aesthetics to map variabes in var_data.
layout	The widths of the sample plot window and the variable plot window. Widths are out of 12.
width	The width of the plots, in pixels.
res	The resolution for the plots.

jfukuyama/localBiplots documentation built on Jan. 10, 2023, 3:33 a.m.