docs/SPEAR.md

In jgygi/SPEAR: SPEAR - Sparse Supervised Bayesian Factor Model for Multi-omic Analyses

SPEAR

Sparse Supervised Bayesian Factor Model for Multi-Omics

Installation:

To install the most up-to-date development version of SPEAR in R:

remotes::install_github("jgygi/SPEAR@main", build_vignettes = TRUE)

NOTE: this will install the vignettes described below as well.

Vignettes / SPEAR Tutorials:

Once installed, use any of the following commands in R below to see all vignettes:

SPEAR::SPEAR.help()

browseVignettes("SPEAR")

Bugs / Issues:

Please contact with any bug reports or issues to:

• Jeremy Gygi ([e-mail]) Twitter: (@JeremyGygi)

• Leying Guan ([e-mail])

Package Requirements:

The following packages are required for installing SPEAR and the vignettes. They are installed automatically when installing SPEAR (see Installation below).

BH

cowplot

elasticnet

ggplot2

glmnet

MASS

ordinalNet

parallel

R6

Rcpp (>= 1.0.5)

RcppArmadillo

reshape2

viridis

circlize

jgygi/SPEAR documentation built on July 5, 2023, 5:35 p.m.