docs/vignettes/SPEAR.md

In jgygi/SPEAR: SPEAR - Sparse Supervised Bayesian Factor Model for Multi-omic Analyses

'SPEAR'

Sparse Supervised Bayesian Factor Model

Installing SPEAR:

Follow installation instructions in README (located here or at https://github.com/jgygi/SPEAR)

SPEAR vignette directory:

Please use the following vignettes for help with running SPEAR…

| No. | Vignette Title | Vignette Topic(s) | Links | |----:|:------------------------:|:-------------------------------------------------:|:----------------------------------------:| | 1 | Quick SPEAR Walkthrough | Quick walkthrough of using SPEAR generically | link | | 2 | Preparing Data for SPEAR | Data Preparation, Data Preprocessing | link | | 3 | Making a SPEARobject | Setting up a SPEARobject to be trained | link | | 4 | Running SPEAR | Setting up $run.cv.spear() and $cv.evaluate() | link | | 5 | SPEAR Plots | Using the plotting functions in SPEAR | link |

Here are some in-depth examples:

| No. | Vignette Title | Vignette Topic(s) | Links | |----:|:------------------------------------:|:-----------------------------------------------------------------:|:-----------------------------:| | 6 | Gaussian Example | Simluated gaussian data example | link | | 7 | Ordinal/Binomial/Multinomial Example | Simluated ordinal data example (similar for multinomial/binomial) | link |

Issues / Bugs:

Contact me with any issues or bugs:

Jeremy Gygi ([e-mail])

jgygi/SPEAR documentation built on July 5, 2023, 5:35 p.m.