Man pages for jhooge/BioViz
BiomarkerVizard
| BioViz-package | Biomarker Visualizations |
| clustering.hclust_plot | Function to plot a heatmap with hirarchical clustering |
| dimred.plot_mca | Function to plot components from MCA (Multiple Correspondence... |
| dimred.plot_pca | Function to plot components from PCA (Principal Component... |
| dimred.plot_pls | Function to plot components from PLS (Partial Least Squares) |
| dimred.plot_tsne | Function to plot components from t-SNE (t-Stochastic Neighbor... |
| general.bar_plot_by | Function to create a barplot, with bars split by a second... |
| general.bar_plot_simple | Function to create a simple barplot |
| general.box_plot_facetted | Function to create boxplots of a metric variable, grouped by... |
| general.corplot | Function to create a correlation plot. |
| general.hist_log | Function to create histograms to check for the necessity of a... |
| general.lineplot | Function generate (non-)facetted lineplot |
| general.plot_pairs | Pairs Plot |
| general.scatter | Function factory to generate a scatter plots |
| general.scatter_by | Function to create scatterplots, color-coded by subgroups |
| general.scatter.facetted | Function to generate a facetted scatter plot |
| general.scatter.simple | Function to generate a simple scatter plot |
| general.volcano_plot | Plots a volcano plot. |
| geom_variability | Custom geom for general.lineplot |
| iPSC | iPSC derived motor neuron cultures from C9ORF72 carriers |
| modeling.roc_curve_plot | Function to plot ROC (Receiver Operating Characteristic)... |
| panel_cor | Correlation Coefficients Panel |
| panel_hist | Histogram Panel |
| panel_smoothScatter | Smooth Scatter Panel |
| timeseries.plot1 | Function for a time series plot |
| timeseries.plot2 | Function for a time series plot |
| utils.exBar | Function to dictate the exact number of bars in a histogram |
| utils.pos_dodge | Function for position dodging in a plot |
| utils.trafo_pan | Function to transform x and y coordinates |
