general.lineplot: Function generate (non-)facetted lineplot

In jhooge/BioViz: BiomarkerVizard

Description

Function generate (non-)facetted lineplot

Usage

general.lineplot(data, by = NULL, facet.rows = 1, upper.err, lower.err,
  var.type = c("errorbar", "ribbon"), title = NULL, xlab = NULL,
  ylab = NULL, xlim = NULL, ylim = NULL, legend.position = "right",
  size = 3, x.log10trans = FALSE, y.log10trans = FALSE)

Arguments

data	A data frame in long format (Required)
by	Variable the plot should be facetted by (Default: NULL)
facet.rows	Number of rows in which the facets should be displayed. (Default: 1)
upper.err	Upper bound width on errorbars or ribbon variability region (Default: 1)
lower.err	Lower bound width on errorbars or ribbon variability region (Default: 1)
var.type	Type of how to display variability ("errorbar", "ribbon") (Default: "errorbar")
title	Title of the plot (Default: NULL)
xlab	x-axis label (Default: NULL)
ylab	y-axis label (Default: NULL)
xlim	Upper and lower limit (e.g. c(0, 10)) of x-axis (Default: NULL)
ylim	Upper and lower limit (e.g. c(0, 10)) of y-axis (Default: NULL)
legend.position	Position of the legend ("none", "left", "right", "top", "bottom") (Default: "left")
size	Point Size (Default: 3)
x.log10trans	Logical flag for log10 x-axis trasformation
y.log10trans	Logical flag for log10 y-axis trasformation

Value

a ggplot2 plot

Author(s)

Jens Hooge

Examples

## Not run: 
library(reshape2)
library(ggplot2)
n=7
df <- data.frame(Dose1=exp((1/2)*1:n),
                 Dose2=exp((1/3)*1:n),
                 Dose3=exp((1/4)*1:n),
                 Dose4=exp((1/5)*1:n),
                 Dose5=exp((1/6)*1:n),
                 Dose6=exp((1/7)*1:n),
                 Visit=1:n)
df <- melt(df, id=c("Visit"))
colnames(df) <- c("Visit", "Dose", "Measure") 

## Lineplot with Errorbars
general.lineplot(df, upper.err=1, lower.err=1, var.type="errorbar")

## Lineplot with Errorbars and log transformed y axis
general.lineplot(df, upper.err=1, lower.err=1, var.type="errorbar", y.log10trans = T)

## Facetted Lineplot
general.lineplot(df, by="Dose", facet.row=3, upper.err=1, lower.err=1, 
                 var.type="errorbar", y.log10trans = T)
                 
## Lineplot with Error Ribbon 
general.lineplot(df, by="Dose", upper.err=1, lower.err=1, var.type="ribbon")

## Lineplot with Error Ribbon and log transformed y-axis
general.lineplot(df, by="Dose", upper.err=1, lower.err=1, var.type="ribbon", y.log10trans = T)

## End(Not run)

jhooge/BioViz documentation built on May 19, 2019, 9:28 a.m.