Man pages for jianan/qtlintv
QTL interval estimation

addblankadd a gap region into a chr by removing markers.
gen_mapgenerate a mice genetic map with one gape region on CHR
gen_pheno_ailgenerate pheno for ail data
gen_pheno_dogenerate pheno from pedigree and xo data.
gen_pheno_do_allqtlgenerate pheno for all the qtlpositons
get_minor_qtlgenerate some minor qtls from other Chrs, not X and the QTL...
get_minor_qtl_dogenerate some minor qtls from other Chrs, not X and the QTL...
lod.dropLOD-drop for lod support interval to reach 95% coverage rate.
plotmapplot map
prep_data_foundersprepare for DOQTL::calc.genoprob
prep_data_founders_chrprepare for DOQTL::calc.genoprob
qtlintvqtlintv.
qtlsummary.dosummarize of do simulation results
run.ailrun simulations for AIL
run.dorun simulations for DO type experiments
run.do.fixccrun simulations for DO type experiments, with the same pre-CC...
run.do.singlerun simulations for DO type experiments
simu_snp_do_foundercreate fake snps for DO founders, while keeping the same...
jianan/qtlintv documentation built on May 17, 2017, 8:26 p.m.