API for jianhong/ATACseqQC
ATAC-seq Quality Control
| Global functions | |
|---|---|
| ATACseqQC | Man page |
| ATACseqQC-package | Man page |
| DB | Man page Source code |
| GRbin | Source code |
| GRoperator | Source code |
| NFRscore | Man page Source code |
| PTscore | Man page Source code |
| TSSEscore | Man page Source code |
| bamQC | Man page Source code |
| checkBamSeqStyle | Source code |
| checkMaxChrLength | Source code |
| checkMposTag | Source code |
| distanceDyad | Man page Source code |
| enrichedFragments | Man page Source code |
| estimateLibComplexity | Man page Source code |
| exportBamFile | Source code |
| factorFootprints | Man page Source code |
| fillColumn | Source code |
| footprintsScanner | Man page Source code |
| formatInt | Source code |
| fragSizeDist | Man page Source code |
| getBamTargets | Source code |
| getRelationship | Source code |
| loadBamFile | Source code |
| peakdet | Man page Source code |
| plotCorrelation | Man page Source code |
| plotFootprints | Man page |
| prepareBindingSitesList | Man page Source code |
| pseudoPausingIndex | Man page Source code |
| pwm2pfm | Source code |
| pwmscores | Man page Source code |
| readBamFile | Man page Source code |
| readGAlignmentsFromMeta | Source code |
| readsDupFreq | Man page Source code |
| renameMcol | Source code |
| saturationPlot | Man page Source code |
| shiftGAlignments | Man page Source code |
| shiftGAlignmentsList | Man page Source code |
| shiftReads | Man page Source code |
| splitBam | Man page Source code |
| splitGAlignmentsByCut | Man page Source code |
| vPlot | Man page Source code |
| writeListOfGAlignments | Man page Source code |
