TSS.zebrafish.Zv9: TSS annotation for Danio rerio (Zv9) obtained from biomaRt
In jianhong/ChIPpeakAnno: Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments, or any experiments that result in large number of genomic interval data
TSS.zebrafish.Zv9 R Documentation
TSS annotation for Danio rerio (Zv9) obtained from biomaRt
Description
TSS annotation for Danio rerio (Zv9) obtained from biomaRt
Usage
TSS.zebrafish.Zv9
Format
GRanges with slot start holding the start position of the gene, slot
end holding the end position of the gene, slot names holding ensembl gene
id, slot seqnames holding the chromosome location where the gene is located
and slot strand holding the strinad information. In addition, the following
variables are included.
- list("description")
description
of the gene
Details
Annotation data obtained by:
mart <- useMart(biomart="ENSEMBL_MART_ENSEMBL",
host="mar2015.archive.ensembl.org", path="/biomart/martservice",
dataset="drerio_gene_ensembl")
getAnnotation(mart, featureType = "TSS")
Examples
data(TSS.zebrafish.Zv9)
slotNames(TSS.zebrafish.Zv9)
jianhong/ChIPpeakAnno documentation built on April 28, 2024, 3:10 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| TSS.zebrafish.Zv9 | R Documentation |
TSS annotation for Danio rerio (Zv9) obtained from biomaRt
Description
TSS annotation for Danio rerio (Zv9) obtained from biomaRt
Usage
TSS.zebrafish.Zv9
Format
GRanges with slot start holding the start position of the gene, slot end holding the end position of the gene, slot names holding ensembl gene id, slot seqnames holding the chromosome location where the gene is located and slot strand holding the strinad information. In addition, the following variables are included.
- list("description")
description of the gene
Details
Annotation data obtained by:
mart <- useMart(biomart="ENSEMBL_MART_ENSEMBL", host="mar2015.archive.ensembl.org", path="/biomart/martservice", dataset="drerio_gene_ensembl")
getAnnotation(mart, featureType = "TSS")
Examples
data(TSS.zebrafish.Zv9)
slotNames(TSS.zebrafish.Zv9)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.