oligoFrequency: get the oligonucleotide frequency

In jianhong/ChIPpeakAnno: Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments, or any experiments that result in large number of genomic interval data

get the oligonucleotide frequency

Description

Prepare the oligonucleotide frequency for given Markov order.

Usage

oligoFrequency(sequence, MarkovOrder = 3L)

Arguments

sequence	The sequences packaged in DNAStringSet, DNAString object or output of function getAllPeakSequence.
MarkovOrder	Markov order.

Value

A numeric vector.

Author(s)

Jianhong Ou

See Also

See Also as oligoSummary

Examples

    library(seqinr)
    library(Biostrings)
    oligoFrequency(DNAString("AATTCGACGTACAGATGACTAGACT"))

jianhong/ChIPpeakAnno documentation built on April 28, 2024, 3:10 p.m.