oligoFrequency: get the oligonucleotide frequency
In jianhong/ChIPpeakAnno: Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments, or any experiments that result in large number of genomic interval data
oligoFrequency R Documentation
get the oligonucleotide frequency
Description
Prepare the oligonucleotide frequency for given Markov order.
Usage
oligoFrequency(sequence, MarkovOrder = 3L)
Arguments
sequence
The sequences packaged in DNAStringSet, DNAString object or
output of function getAllPeakSequence.
MarkovOrder
Markov order.
Value
A numeric vector.
Author(s)
Jianhong Ou
See Also
See Also as oligoSummary
Examples
library(seqinr)
library(Biostrings)
oligoFrequency(DNAString("AATTCGACGTACAGATGACTAGACT"))
jianhong/ChIPpeakAnno documentation built on Nov. 1, 2024, 8:55 a.m.
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| oligoFrequency | R Documentation |
get the oligonucleotide frequency
Description
Prepare the oligonucleotide frequency for given Markov order.
Usage
oligoFrequency(sequence, MarkovOrder = 3L)
Arguments
sequence |
The sequences packaged in DNAStringSet, DNAString object or output of function getAllPeakSequence. |
MarkovOrder |
Markov order. |
Value
A numeric vector.
Author(s)
Jianhong Ou
See Also
See Also as oligoSummary
Examples
library(seqinr)
library(Biostrings)
oligoFrequency(DNAString("AATTCGACGTACAGATGACTAGACT"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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