detectNodes: Detect the interaction node

View source: R/detectNodes.R

detectNodesR Documentation

Detect the interaction node

Description

Define the interaction node from input Pairs.

Usage

detectNodes(interaction, pval_cutoff = 0.05, ...)

Arguments

interaction

An object of Pairs to represent interactions.

pval_cutoff

Cutoff P value for interaction node by poisson distribution

...

Not used.

Value

A list of interaction nodes with elements: node_connection, Pairs object represent interactions interacted with nodes; nodes, GRanges object represent regions involved in nodes; node_regions, GRanges object represent regions interacted with nodes.

Examples

library(rtracklayer)
p <- system.file("extdata", "WT.2.bedpe",
                 package = "GenomicInteractionNodes")
interactions <- import(con=p, format="bedpe")
nodes <- detectNodes(interactions)

jianhong/GenomicInteractionHub documentation built on April 14, 2022, 10:49 a.m.