README.md

In jianhong/GenomicInteractionNodes: A R/Bioconductor package to detect the interaction nodes from HiC/HiChIP/HiCAR data

GenomicInteractionNodes

The GenomicInteractionNodes package define genomic interaction hot regions as interaction nodes with following attributes:

1. it must contain multiple interaction loops,

2. it regulates one or more target genes.

Installation

You can install the package via devtools::install_github from github.

library(devtools)
install_github("jianhong/GenomicInteractionNodes")

You can also try to install it via BiocManager::install when it is ready in Bioconductor.

library(BiocManager)
install("GenomicInteractionNodes")

Documentation

To view documentation of GenomicInteractionNodes, start R and enter:

browseVignettes("GenomicInteractionNodes")

jianhong/GenomicInteractionNodes documentation built on Oct. 28, 2023, 1:11 a.m.