ica_genotype_test: Function that uses lrgpr's glmApply to test associations...

In jinhyunju/confeti: CONfounding Factor Estimation Through Independent component analysis (CONFETI)

Description

Testing associations between IC coefficients and genotypes.

Usage

ica_genotype_test(ica_object, genotype_mx, n_cores = 1,
  sig_threshold = 0.05, return_pval = FALSE)

Arguments

ica_object	ICA object that is created with the 'run_ica()' function from the 'picaplot' package.
genotype_mx	Input genotype matrix with N samples x G genotypes.
n_cores	Number of cores to use for this process.
sig_threshold	Bonferroni significance threshold to use in calling significant p-values.
return_pval	TRUE or FALSE value indicating whether the calculated p-value matrix should be returned.

Value

ICA object with confounding factor information added.

jinhyunju/confeti documentation built on May 19, 2019, 10:35 a.m.