Man pages for jinhyunju/picaplot
An R package for analyzing gene expression data with Principal / Independent Component Analysis
| covarAssociationCheck | Calculate association between components and given covariates |
| detectClusters | Function to estimate the number of clusters in IC... |
| expr_data | A subset of gene expression measurements with 2642 genes and... |
| getCovariateMx | Function that returns a matrix of IC coefficients that can be... |
| getGeneInfo | Retrieve information for top contributing genes for a given... |
| plotComponent | Generate plots for single component |
| probe_info | Positional information for 2642 probes used in 'expr_data' |
| reportgen | Generating ICA or PCA summary reports. |
| runICA | Custom ICA function for analyzing gene expression data. |
| runPCA | Custom PCA function for analyzing gene expression data. |
| sample_info | Sample covariate information for 47 samples in 'expr_data' |
