receptor.ligand.annotation.from.object: Receptor Ligand Annotation From Seurat Object

In jinwooee415/queryPathcards: Query Pathcards Package

Description

Uses the seurat object to identify certain ligand-receptor pairs who have expression levels higher than the ones set by the user.

Usage

receptor.ligand.annotation.from.object(seurat.object, group.by,
  receptor.ligand.mat, mean.expression.theshold = 0.1,
  percent.expression.threshold = 0.2)

Arguments

seurat.object	seurat object set by the user.
group.by	variables to group by set by the user.
receptor.ligand.mat	the list of receptors and ligands.
percent.expression.threshold	percent expression threshold set by the user.
mean.expression.threshold	mean expression threshold set by the user.

Value

list of ligand-receptor pairs with expression levels.

jinwooee415/queryPathcards documentation built on Nov. 4, 2019, 2:44 p.m.