loci2migrate: From Loci to Migrate
In jinyung/loci2migrate: From Loci to Migrate
Description
Usage
Arguments
Details
Value
Description
Convert ipyrad's output file (*.loci) into migrate-n's input file
Usage
1
loci2migrate(locipath, poppath, filename)
Arguments
locipath
(char) path to *.loci to be converted
poppath
(char) path to file contains population info, which the first
column is the individuals' labels and the second column is the population
label. The file should be tab delimited.
filename
(char) path for output file
Details
if any locus is not found in all the populations, it will be determined as
"missing locus" and removed. You can find which locus are removed in the
metadata header of the converted file.
Value
a converted file
jinyung/loci2migrate documentation built on July 2, 2019, 8:44 p.m.
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Description Usage Arguments Details Value
Description
Convert ipyrad's output file (*.loci) into migrate-n's input file
Usage
1 | loci2migrate(locipath, poppath, filename)
|
Arguments
locipath |
(char) path to *.loci to be converted |
poppath |
(char) path to file contains population info, which the first column is the individuals' labels and the second column is the population label. The file should be tab delimited. |
filename |
(char) path for output file |
Details
if any locus is not found in all the populations, it will be determined as "missing locus" and removed. You can find which locus are removed in the metadata header of the converted file.
Value
a converted file
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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