setup: Setup environmental variables.

In jk2236/RecordMatching: Statistical detection of relatives typed with disjoint forensic and biomedical loci

Description

This function is meant to be run at the very beginning of the pipeline to set package environmental variables.

Usage

setup(base.dir, bgl.jar, vcf.exe)

Arguments

base.dir	Full path of the base folder of the pipeline. All the output of the pipeline will be saved here. If the folder doesn't exist, it's automatically created.
bgl.jar	Full path to beagle executable. Format must be: (full path to dir)/beagle.(version).jar. version is the Beagle version code (eg. “01Oct15.6a3”).
vcf.exe	Full path to vcftools executable.

Value

None

jk2236/RecordMatching documentation built on Dec. 21, 2021, 12:10 a.m.