BINSEG: Performs Binary Segmentation on a data matrix containing a...

In jkaufy/rpackage2: Segmentation Algorithms (Binary Segmentation and Dynamic Programming)

Description

This function computes binary segmentation on a data table with a logration column.

Usage

BINSEG(data.dt, num_segments)

Arguments

data.dt	A numeric data data containing a log-ratio numeric Vector
num_segments	The number of segments

Details

THIS FUNCTION IS NOT CURRENTLY WORKING!

Value

Returns the number of segments in the model. This function is not currently working

Examples

data(neuroblastoma, package="neuroblastoma")
library(data.table)
proifle_id <- "4"
chromosome_num <- "2"
nb.dt <- data.table(neuroblastoma$profiles)
data.dt <- nb.dt[profile.id==proifle_id & chromosome==chromosome_num]
num_segs <- 20
my.binseg.result <- BINSEG(data.dt, num_segs)

jkaufy/rpackage2 documentation built on Dec. 21, 2021, 12:10 a.m.