em_estd: Estimated parameters for an estimation model

In jkbest2/spatq: Use spatially varying catchability to standardize fishery-dependent data

Estimated parameters for an estimation model

Description

Estimated parameter list for a set of common estimation models. Otherwise will pass through a specification.

Usage

em_estd(estmod, obs_lik = 1L)

Arguments

estmod	Name of an estimation model or a spatq_spec object
obs_lik	Use delta Poisson link log-normal (0) or Tweedie (1)?

Details

Valid estimation models are:

design

Only yearly intercepts

model

Only yearly intercepts

survey

Yearly intercepts and spatial abundance

survey_spt

Yearly intercepts with spatial and spatiotemporal abundance

design_all

Yearly intercepts

model_all

Yearly and vessel intercepts

spatial_ab

Yearly and vessel intercepts, spatial abundance

spatial_q

Yearly and vessel intercepts, spatial abundance and catchability

sptemp_ab

Yearly and vessel intercepts with spatial and spatiotemporal abundance

sptemp_q

Yearly and vessel intercepts, spatiotemporal abundance and spatial catchability

Default is to use a Tweedie observation likelihood and to map all kappa decorrelation rate parameters to the same value.

Value

A spatq_spec object

Author(s)

John K Best

jkbest2/spatq documentation built on Sept. 22, 2022, 3:22 a.m.