Man pages for jknightlab/SepstratifieR
Stratification of infectious disease patients by gene expression profile
| cosineSimilarity | Calculate the cosine similarity between two numeric vectors |
| plotAlignedSamples | Visualise how input samples align to the reference set using... |
| projectPatient | Estimate SRS/SRSq for a single sample by projecting it to a... |
| reference_set_davenport | Whole blood gene expression measurements for 7 genes across... |
| reference_set_davenport_annotations | Metadata for the 7-gene whole blood gene expression data set |
| reference_set_extended | Whole blood gene expression measurements for 7 genes across... |
| reference_set_extended_annotations | Metadata for the 19-gene whole blood gene expression data set |
| runSensitivityAnalysis | Perform a sensitivity analysis to asssess the impact of 'k'... |
| stratifyPatients | Assign samples to sepsis response signature groups |
| test_data | Whole blood gene expression measurements for 143 samples of... |
