test_data: Whole blood gene expression measurements for 143 samples of...

In jknightlab/SepstratifieR: Stratification of infectious disease patients by gene expression profile

Whole blood gene expression measurements for 143 samples of COVID-19 patients and healthy volunteers

Description

An example data set containing gene expression measurements from whole blood for 19 genes

Usage

test_data

Format

A data frame with 143 rows and 19 variables:

ENSG00000144659

SLC25A38, log-transformed gene expression level

ENSG00000103423

DNAJA3, log-transformed gene expression level

ENSG00000135372

NAT10, log-transformed gene expression level

ENSG00000079134

THOC1, log-transformed gene expression level

ENSG00000135972

MRPS9, log-transformed gene expression level

ENSG00000087157

PGS1, log-transformed gene expression level

ENSG00000165006

UBAP1, log-transformed gene expression level

ENSG00000111667

USP5, log-transformed gene expression level

ENSG00000182670

TTC3, log-transformed gene expression level

ENSG00000097033

SH3GLB1, log-transformed gene expression level

ENSG00000165733

BMS1, log-transformed gene expression level

ENSG00000103264

FBXO31, log-transformed gene expression level

ENSG00000152219

ARL14EP, log-transformed gene expression level

ENSG00000100814

CCNB1IP1, log-transformed gene expression level

ENSG00000127334

DYRK2, log-transformed gene expression level

ENSG00000131355

ADGRE3, log-transformed gene expression level

ENSG00000137337

MDC1, log-transformed gene expression level

ENSG00000156414

TDRD9, log-transformed gene expression level

ENSG00000115085

ZAP70, log-transformed gene expression level

...

Details

This data set is formed of 149 samples obtained from 79 COVID-19 patients and 10 healthy volunteers from the COMBAT study (https://doi.org/10.5281/zenodo.6120249).

The values reported in this data set were obtained by log transformation of raw counts obtained from polyA-based RNA-sequencing.

The main use of this data set is to serve as a test set with which to assess the functionality of this package.

jknightlab/SepstratifieR documentation built on March 19, 2022, 9:43 p.m.