normalizeRNASeq: Normalize RNA-Seq data
In jkokosar/RNASeqT:
Description
Usage
Arguments
Value
Author(s)
Description
Normalize RNA-Seq data
Usage
1
2
3
4
normalizeRNASeq(geneFPKMFile = NULL, outputFolder = "./", name = NULL,
groupString = NULL, useERCC = FALSE,
erccFile = system.file("extdata/ERCC_Controls_Analysis.txt", package =
"RNASeqT"))
Arguments
geneFPKMFile
Cuffnorm results file (genes.fpkm_table)
outputFolder
Output folder (default = './')
name
Results file name prefix
groupString
Comma-separated string of sample group names
useERCC
Use ERCC spike-in normalization (default = FALSE)
erccFile
erccFile
Value
None
Author(s)
Charles Lin, Charles.Y.Lin@bcm.edu
jkokosar/RNASeqT documentation built on May 19, 2019, 12:44 p.m.
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Description Usage Arguments Value Author(s)
Description
Normalize RNA-Seq data
Usage
1 2 3 4 | normalizeRNASeq(geneFPKMFile = NULL, outputFolder = "./", name = NULL,
groupString = NULL, useERCC = FALSE,
erccFile = system.file("extdata/ERCC_Controls_Analysis.txt", package =
"RNASeqT"))
|
Arguments
geneFPKMFile |
Cuffnorm results file (genes.fpkm_table) |
outputFolder |
Output folder (default = './') |
name |
Results file name prefix |
groupString |
Comma-separated string of sample group names |
useERCC |
Use ERCC spike-in normalization (default = FALSE) |
erccFile |
erccFile |
Value
None
Author(s)
Charles Lin, Charles.Y.Lin@bcm.edu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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