Files in jlw-ecoevo/gRodon
Inference of prokaryotic growth rates with codon usage statistics
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
NAMESPACE
R/.Rhistory
R/codon_pair_bias.R
R/codon_usage_bias.R
R/fit_gRodon.R
R/predict_growth.R
R/sysdata.rda
R/utilities.R
README.md
gRodon.Rproj
inst/extdata/Accession2Species.rda
inst/extdata/Accession2Species_Madin.rda
inst/extdata/CodonStatistics.rda
inst/extdata/CodonStatistics_Madin.rda
inst/extdata/ERR2143764_fastp_map2ffn_counts.tsv
inst/extdata/ERR2143764_fastp_prokka_scaffolds.ffn.gz
inst/extdata/GCF_000349925.2_ASM34992v2_cds_from_genomic.fna.gz
inst/extdata/GCF_003253775.1_ASM325377v1_cds_from_genomic.fna.gz
inst/extdata/GrowthRates.rda
inst/extdata/GrowthRates_Madin.rda
inst/extdata/fit_gRodon_script.R
inst/extdata/fit_gRodon_script_madin.R
man/fitModels.Rd
man/getStatistics.Rd
man/getStatisticsBatch.Rd
man/predictGrowth.Rd
vignettes/.gitignore
vignettes/gRodon-vignette.Rmd
