getStatisticsBatch: Get Codon Statistics for All Genomes In a Directory
In jlw-ecoevo/gRodon: Inference of prokaryotic growth rates with codon usage statistics
getStatisticsBatch R Documentation
Get Codon Statistics for All Genomes In a Directory
Description
This function gets the codon usage statistics for all CDS files in a directory (used to fit gRodon).
It is assumed that gene names contain annotations of ribosomal proteins.
Usage
getStatisticsBatch(directory, mc.cores = 1)
Arguments
directory
path to directory containing annotated CDS files
jlw-ecoevo/gRodon documentation built on Dec. 3, 2022, 11:39 a.m.
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| getStatisticsBatch | R Documentation |
Get Codon Statistics for All Genomes In a Directory
Description
This function gets the codon usage statistics for all CDS files in a directory (used to fit gRodon). It is assumed that gene names contain annotations of ribosomal proteins.
Usage
getStatisticsBatch(directory, mc.cores = 1)
Arguments
directory |
path to directory containing annotated CDS files |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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