Files in jmacdon/GenomicFeatures
Conveniently import and query gene models

.BBSoptions

.gitignore

DESCRIPTION

NAMESPACE

NEWS

R/Ensembl-utils.R R/FeatureDb-class.R R/TxDb-SELECT-helpers.R R/TxDb-class.R R/TxDb-schema.R R/UCSC-utils.R R/coordinate-mapping-methods.R R/coverageByTranscript.R R/disjointExons.R R/exonicParts.R R/extractTranscriptSeqs.R R/extractUpstreamSeqs.R R/features.R R/findCompatibleMarts.R R/getPromoterSeq-methods.R R/id2name.R R/makeFeatureDbFromUCSC.R R/makeTxDb.R R/makeTxDbFromBiomart.R R/makeTxDbFromEnsembl.R R/makeTxDbFromGFF.R R/makeTxDbFromGRanges.R R/makeTxDbFromUCSC.R R/makeTxDbPackage.R R/mapIdsToRanges.R R/microRNAs.R R/nearest-methods.R R/select-methods.R R/transcriptLengths.R R/transcriptLocs2refLocs.R R/transcripts.R R/transcriptsBy.R R/transcriptsByOverlaps.R R/utils.R R/zzz.R README.md

TODO

inst/CITATION

inst/extdata/Biomart_Ensembl_sample.sqlite

inst/extdata/FeatureDb.sqlite

inst/extdata/GFF3_files/NC_011025.gff

inst/extdata/GFF3_files/TheCanonicalGene_v1.gff3

inst/extdata/GFF3_files/TheCanonicalGene_v2.gff3

inst/extdata/GFF3_files/a.gff3

inst/extdata/GFF3_files/a.sqlite

inst/extdata/GFF3_files/dmel-1000-r5.11.filtered.gff

inst/extdata/GFF3_files/dmel-1000-r5.11.filtered.sqlite

inst/extdata/GTF_files/Aedes_aegypti.partial.gtf

inst/extdata/GTF_files/Aedes_aegypti.partial.sqlite

inst/extdata/GTF_files/test1.gtf

inst/extdata/cD.exByEdge-SG-Vig.Rda

inst/extdata/cD.exsByGenes-SG-Vig.Rda

inst/extdata/events.Rda

inst/extdata/hg19_knownGene_sample.sqlite

inst/extdata/sacCer2_sgdGene_txdb.sqlite

inst/extdata/sample_ranges.rds

inst/script/makeTxDbs.R inst/script/maketRNAFDb.R

inst/txdb-template/DESCRIPTION

inst/txdb-template/NAMESPACE

inst/txdb-template/R/zzz.R

inst/txdb-template/man/package.Rd

vignettes/GenomicFeatures.Rnw

jmacdon/GenomicFeatures documentation built on Jan. 2, 2022, 7:40 a.m.

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jmacdon/GenomicFeatures
Conveniently import and query gene models

Files in jmacdon/GenomicFeatures
Conveniently import and query gene models

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jmacdon/GenomicFeatures Conveniently import and query gene models

Files in jmacdon/GenomicFeatures Conveniently import and query gene models

R Package Documentation

Browse R Packages

We want your feedback!

jmacdon/GenomicFeatures
Conveniently import and query gene models

Files in jmacdon/GenomicFeatures
Conveniently import and query gene models