checkOrder: Checks whether a eSet-derived class is ordered by chromosome...
In jmacdon/oligoClasses: Classes for high-throughput arrays supported by oligo and crlmm
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Checks whether a eSet-derived class (e.g., a SnpSet or
CNSet object) is ordered by chromosome and
physical position
Usage
1
2
checkOrder(object, verbose = FALSE)
chromosomePositionOrder(object, ...)
Arguments
object
A SnpSet or CopyNumberSet.
verbose
Logical.
...
additional arguments to order
Details
Checks whether the object is ordered by chromosome and physical position.
Value
Logical
Author(s)
R. Scharpf
See Also
Examples
1
2
3
4
5
data(oligoSetExample)
if(!checkOrder(oligoSet)){
oligoSet <- chromosomePositionOrder(oligoSet)
}
checkOrder(oligoSet)
jmacdon/oligoClasses documentation built on Aug. 11, 2020, 12:32 a.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
Checks whether a eSet-derived class (e.g., a SnpSet or
CNSet object) is ordered by chromosome and
physical position
Usage
1 2 | checkOrder(object, verbose = FALSE)
chromosomePositionOrder(object, ...)
|
Arguments
object |
A |
verbose |
Logical. |
... |
additional arguments to |
Details
Checks whether the object is ordered by chromosome and physical position.
Value
Logical
Author(s)
R. Scharpf
See Also
Examples
1 2 3 4 5 | data(oligoSetExample)
if(!checkOrder(oligoSet)){
oligoSet <- chromosomePositionOrder(oligoSet)
}
checkOrder(oligoSet)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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