s.curve.plot: Plotting tool for specification curve output from s.curve

In jmobrien/SpecCurve: Constructing, Running, and Visualizing Specification Curves

Description

Plotting tool for specification curve output from s.curve

Usage

s.curve.plot(s.curve.mod, what = "estimate", title = NULL,
  plot.order = NULL, decreasing = TRUE, show.sig = TRUE,
  include.permutations = FALSE, perm.sig = FALSE, pointsize = 2,
  x.alt = NULL, plot.theme = NULL)

Arguments

s.curve.mod	fitted model object from function s.curve() or s.curve.update()
what	character, for each specification, what result is to be plotted? Accepts "estimate" (treatment estimate, default), "p.value", "perm.p.value" (permutation-test-estimated p-value), "AIC", "BIC"
title	character, what should the title of the plot be?
plot.order	character - what, if anything, should the values be sorted on? Accepts same values as estimate "parameter"
decreasing	logical, when sorting, use decreasing order (default TRUE)
show.sig	logical, should the points be colorized by significance? (default TRUE)
include.permutations	logical, if permutations are present, include CI boundaries of permutations? (default FALSE)
perm.sig	logical, use permutation p-values for significance markings? (default FALSE)
pointsize	numeric, size of points to use in plotting (default 2)
x.alt	numeric vector, with same length as # specifications. If included, manually positions specifications
plot.theme	character, name of theme available to ggplot to override default (e.g. "minimal", "bw", "classic")

Value

a ggplot plot summarizing the results of the fitted s.curve object passed to it. Can be saved, or will render plot in viewer if printed to console.

jmobrien/SpecCurve documentation built on Feb. 12, 2020, 11:35 a.m.