Man pages for jmpowers/bouquet
Filter and Augment Biological GC-MS Data
| augment_pubchem | Lookup data from PubChem |
| combine_filters | Combine filters |
| filter_ambient_date | Filter on ratios between samples and controls by date |
| filter_ambient_presence | Filter on occurence in controls |
| filter_ambient_ratio | Filter on ratios between samples and controls |
| filter_ambient_ttest | Filter on significant differences from controls |
| filter_area | Filter on the maximum peak area of a compound |
| filter_contaminant | Filter known contaminants |
| filter_count | Filter on compound counts |
| filter_freq | Filter on compound frequency |
| filter_leaf_ratio | A function to filter on whether the quantity of a compound in... |
| filter_match | Filter on the match between a compound and a library |
| filter_RT | Filter on retention times |
| GCMS_output | Floral volatiles of Schiedea hybrids |
| load_longdata | Load GC-MS data |
| load_metadata | Load metadata |
| make_chemtable | Make chemical table |
| make_sampletable | Make sample table |
| plot_filters | Diagnostic plot of compound filtering |
| prune_sampletable | Prune sampletable |
| prune_sampletable_dates | Prune sampletable by date Zeros out cells in the sample table... |
| prune_sampletable_leaf | Prune sampletable by leaf Zeros out cells in the sample table... |
| standardize_finaltable | Standardize finaltable by amount or row total |
