I was asked to fix two notes that occurred on the CRAN checks.
random_steps.brusted_track_xyt()
, when burst_id
did not start with 1. as_move()
. make_trast()
(reported by joshcullen; #105)lonlat=TRUE
when calculating step lengths (#103, #107, #108)rhub::check_cran_submission()
There were no errors, warnings or notes locally and with win-builder.
There were two notes on rhub:
* checking for non-standard things in the check directory ... NOTE
Found the following files/directories:
''NULL''
* checking for detritus in the temp directory ... NOTE
Found the following files/directories:
'lastMiKTeXException'
The first notes seems to be caused by r-hub: https://stackoverflow.com/questions/76317685/found-the-following-files-directories-null-when-i-run-devtoolscheck-rhub
This is a minor update and fixes a bug that was introduced with the last update.
random_steps.brusted_track_xyt()
.There were no errors, warnings or notes.
extract_covariates()
no longer accepts a buffer. time_of_day()
to use suncalc
instead of maptools
.hr_overlap()
from raster
to terra
. od()
and hr_od()
from raster
to terra
. hr_isopleths()
from raster
/sp
to terra
/sf
. hr_cud()
updated from raster
to terra
. extrackt_covariates*()
updated from raster
to terra
.distance_to_center()
was removed. step
, it now uses sf::st_distance()
instead of raster::distance()
. raster
, sp
, rgeos
and spdep
were removed. as_sp()
is now as_sf()
and replaced the function call in the whole package.hr_akde()
to use terra
instead of raster
.hr_locoh()
to use sf
instead of rgeos
.ta_correlation()
reported by Ines Khazar. There were no errors, warnings or notes.
I was asked to fix warnings that occured on one specific test environment:
checking whether package ‘amt’ can be installed ... [38s/38s] WARNING Found the following significant warnings: Warning: multiple methods tables found for ‘direction’ Warning: multiple methods tables found for ‘gridDistance’
using platform: x86_64-apple-darwin17.0 (64-bit) [https://www.r-project.org/nosvn/R.check/r-release-macos-x86_64/amt-00check.html]
It seems that this issue is resolved, if packages raster
and terra
are newly installed, this was suggested by Roger Bivand here: https://stackoverflow.com/questions/70674136/r-package-warning-multiple-methods-tables-found-for-direction/70716776#70716776
I also fixed warnings that occurred within \donttest{}
.
There were no errors, warnings or notes.
There were warning no errors, warnings or notes.
There were no errors or warnings. There was one note.
I did major updates to the documentation following suggestions received by Email on the 16th of November. This included adding \value
to all Rd files and removing all \dontrun{ }
-statements from the examples.
There were no errors or warnings. There was one note.
bcpa
package.hnorm
and lnorm
step-length distributions.st_crs
for CRS. Major updates for several functionsdist_cent
.as_track
for data.frames
.verbose
to make_track()
. hr_isopleths()
for aKDE.There were no errors, warnings or notes.
unnest
works for track_xy*hr_akde
. This includes that now CI are available for hr_overlap
log_rss
.There were no errors or warnings. On some platforms I received a note indicating that I have to many imports from non-default packages (local check).
hr_overlap
gained two new arguments labels
and consecutive.only
.log_rss
new CIRdpack
to imports. group_by
for random points works as expected.There were no errors or warnings. On some platforms I received a note indicating that I have to many imports from non-default packages (local check).
hr_mcp
gained an argument keep.data
as_track
can now convert steps_xyt
back to a track_xyt
plot
function for home ranges improvedsite_fidelity
from package rhr
.There were no errors or warnings. On some platforms I received a note indicating that I have to many imports from non-default packages. I will reduce the number of imports in futur versions of the amt
package.
The unit tests gave an error for MacOS. I was asked by Prof. B. Ripley to resolve these.
I this and tested the package again with
rhub::check(platform = "macos-highsierra-release-cran")
There were no errors warnings or notes.
There were no errors, warnings or notes
random_steps
uses abs direction as reference instead of relative directionI was asked to fix the references in the Description to <doi:prefix/suffix>
which is now done.
There were no errors, warnings or notes.
extract_covariate
now works with new version of tibble for raster stacks.fit_distr
for gamma distribution, now replaces 0 step length with min setep- length and informs the user with a message. testthat
with tinytest
There were no errors or warnings. There was 1 note.
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Johannes Signer <jsigner@gwdg.de>'
Days since last update: 4
The Description field contains
<https://doi.org/10.1890/04-0953> and integrated step-selection
functions <https://doi.org/10.1111/2041-210X.12528>), and simulation of
<https://doi.org/10.1002/ecs2.1771>.```
move
packages.random_points
by addeing methods for track, hr and spatial objects.random_steps
velox
. This makes extract_covariates_along
slower. There were no errors or warnings. There was 1 note.
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Johannes Signer <jsigner@gwdg.de>'
New submission
Package was archived on CRAN
CRAN repository db overrides:
X-CRAN-Comment: Archived on 2020-03-17 as depends on archived package
'velox'.
There were no errors or warnings.
There was one note using win builder:
* checking CRAN incoming feasibility ... Note_to_CRAN_maintainers
Maintainer: 'Johannes Signer <jsigner@gwdg.de>'
There were no ERRORs or WARNINGs.
fedora-clang-devel
plattform:* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
‘Rcpp’ ‘magrittr’
All declared Imports should be used.
Both packages (Rcpp
and magrittr
) are used. I export the pipe operator (%>%
) from magrittr
and use Rcpp
for source compiled code.
There are no downstream dependencies.
random_steps
gained a new distribution for random steps (exponential).random_steps
extract_covariates_along
, extracts covariates along a random step.steps
gains a new argument: keep_cols
in order to keep columns from point when creating steps.simulate_tud
: a convenience wrapper arround simulate_ud
to simulate transition UDs.mk_track
called make_track
.mk_track
gained a new argument check_duplicates
that allows to the user to specify if temporal duplicates should give an error or not.hr_kde
to calculate Kernel home ranges.steps
now uses difftime
to calcualte time differences.data_frame
sThere were no ERRORs, WARNINGs or NOTEs.
There are no downstream dependencies.
Minor update to fix:
- Vignette titles
- Add Rdpack
(used for Rdmacros) to suggested packages.
There were no ERRORs, WARNINGs or NOTEs.
There are no downstream dependencies.
There were no ERRORs or WARNINGs.
There was one NOTE:
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Johannes Signer <jsigner@gwdg.de>'
New submission
There are no downstream dependencies.
Thanks, please write package names and software names in single quotes (e.g. 'amt') in title and description.
Please fix and resubmit.
There were no ERRORs or WARNINGs.
There was one NOTE:
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Johannes Signer <jsigner@gwdg.de>'
I adjusted the Description
of the package and enclosed amt (the package name) in single quotes.
There are no downstream dependencies.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.