jmwozniak/PTMphinder: An R package for PTM localization and motif extraction from proteomic datasets

The R package, PTMphinder, was designed to facilitate the in-depth analysis of proteomic data by researchers, even those with little programming background. The package contains three functions: parseDB, phindPTMs and extractBackground. Together, these functions allow users to reformat “.fasta” databases for easier analysis, localize the PTMs within full proteins, extract motifs surrounding identified PTMs and create proteome-specific motif backgrounds for statistical purposes.

install.packages("remotes")
remotes::install_github("jmwozniak/PTMphinder")