jmwozniak/PTMphinder: An R package for PTM localization and motif extraction from proteomic datasets

The R package, PTMphinder, was designed to facilitate the in-depth analysis of proteomic data by researchers, even those with little programming background. The package contains three functions: parseDB, phindPTMs and extractBackground. Together, these functions allow users to reformat “.fasta” databases for easier analysis, localize the PTMs within full proteins, extract motifs surrounding identified PTMs and create proteome-specific motif backgrounds for statistical purposes.

Getting started

Package details

AuthorJacob M. Wozniak
MaintainerJacob M. Wozniak <[email protected]>
LicenseWhat license is it under?
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
jmwozniak/PTMphinder documentation built on Feb. 22, 2019, 12:03 a.m.