README.md

In jmwozniak/PhosPhinder: An R package for phospho-site localization and motif extraction from phospho-proteomic datasets

PhosPhinder

Introduction

This package was designed to facilitate the in-depth analysis of phospho-proteomic data by researchers, even those with little programming background. The package contains three functions: parseDB, phindPhospho and extractBackground. Together, these functions allow users to reformat “.fasta” databases for easier analysis, localize phospho-sites within full proteins, extract motifs surrounding identified phospho-sites and create proteome-specific motif backgrounds for statistical purposes.

Citation

To be updated pending publication status.

jmwozniak/PhosPhinder documentation built on May 30, 2019, 1:32 p.m.