geoChina: Download from geoChina by a GSE id

In jmzeng1314/GEOmirror: Download expression dataset by GSE id

Description

geoChina will download the expression matrix and phenotype data as an object in ExpressionSet format from cloud in mainland China, so it will be a little fast for users in mainland China. So far, only tencent mirror for our geoChina. it's just a alternative method for getGEO function from GEOquery package. geoChina('GSE1009') is the same as eSet=getGEO('GSE1009', getGPL = F)

Usage

geoChina(gse = "GSE2546", mirror = "tencent")

Arguments

gse	input GSE id, such as GSE1009, GSE2546, default:GSE2546

Value

a list of ExpressionSet, which contains the expression matrix and phenotype data

Examples

geoChina()
geoChina('GSE1009')
geoChina('GSE2546')

jmzeng1314/GEOmirror documentation built on Feb. 15, 2021, 4:32 a.m.