README.md

In jnguyen01/cdspecR: Circular Dichroism Spectroscopy Data Analysis

cdspecR

The goal of cdspecR is to ...

1) automate the process of transforming raw data from circular dichroism (CD) experiments 2) provide high-quality, data visualization while incorporating user-friendly options for personalizing graphs 3) streamline the data analysis process for extracting key information about the biochemistry of the system

How To Install:

#Copy and Paste The Following Code: 
if(!require(remotes)){
  install.packages("remotes")
}
remotes::install_github("jnguyen01/cdspecR")

How To Use These Functions:

#Load The Package
library(cdspecR)

# Step 1 - Import and select folder containing desired CSV files
protein <- importCD() 

# [Optional] Overlay all melting graphs 
spectra(protein) 

# Step 2 - Generate a plot of ellipiticity as a function of temperature
melt <- plotMelt(protein, wavelength=220)

# Step 3 -  Calculate fraction unfolded and plot it as a function of temperature
analyze <- analyzeMelt(melt)

# Step 4 - Use van't Hoff equation to approximate thermodynamics parameters of the system
vh <- thermodynamics(analyze)

jnguyen01/cdspecR documentation built on Feb. 5, 2022, 4:26 p.m.