API for joelnitta/baitfindR
Find Baits for Sequence Capture
| Global functions | |
|---|---|
| %>% | Man page |
| blast_n | Man page |
| blast_n_list | Man page |
| blast_p | Man page |
| blast_to_mcl | Man page |
| build_blast_db | Man page |
| calculate_alignment_stats | Man page |
| cat_files | Man page |
| cd_hit_est | Man page |
| clean_gff | Man page |
| cut_long_internal_branches | Man page |
| delete_old_output | Man page |
| example_transcriptomes | Man page |
| extract_blast_hits | Man page |
| extract_regions_from_fasta | Man page |
| fasta_to_tree | Man page |
| fill_introns | Man page |
| filter_1to1_orthologs | Man page |
| filter_fasta | Man page |
| find_bed_regions | Man page |
| fix_names_from_transdecoder | Man page |
| get_out_hash | Man page Source code |
| mafft_wrapper | Man page |
| make_dir | Man page |
| mask_regions_in_fasta | Man page |
| mask_tips_by_taxonID_transcripts | Man page |
| mcl | Man page |
| onekp_data | Man page |
| phyutility_wrapper | Man page |
| prune_paralogs_MI | Man page |
| prune_paralogs_MO | Man page |
| prune_paralogs_RT | Man page |
| realign_with_best_hits | Man page |
| set_ys_path | Man page |
| tcs | Man page |
| tcs_loop | Man page |
| transdecoder_long_orfs | Man page |
| transdecoder_predict | Man page |
| trim_both_ends | Man page |
| trim_one_end | Man page |
| trim_tips | Man page |
| write_fasta_files | Man page |
| write_fasta_files_from_mcl | Man page |
| write_fasta_files_from_trees | Man page |
| write_ortholog_fasta_files | Man page |
