set_ys_path: Set the default path to Y&S scripts.

In joelnitta/baitfindR: Find Baits for Sequence Capture

Description

This will overwrite the default value of the path_to_ys argument for all baitfindR functions.

Usage

set_ys_path(path)

Arguments

path	Character vector of length one; the complete path to the folder containing Y&S python scripts, e.g., "/Users/me/apps/phylogenomic_dataset_construction/"

Author(s)

Joel H Nitta, [e-mail]

References

Yang, Y. and S.A. Smith. 2014. Orthology inference in non-model organisms using transcriptomes and low-coverage genomes: improving accuracy and matrix occupancy for phylogenomics. Molecular Biology and Evolution 31:3081-3092. https://bitbucket.org/yangya/phylogenomic_dataset_construction/overview

Examples

set_ys_path("/Users/me/apps/phylogenomic_dataset_construction/")

joelnitta/baitfindR documentation built on May 7, 2020, 6:21 p.m.