Man pages for joey711/biomformat
An interface package for the BIOM file format
| biom-class | The biom format data class. |
| biom_data-methods | Access main data observation matrix data from 'biom-class'. |
| biom-methods | Build and return an instance of the biom-class. |
| biom-package | This is an R package for interfacing with the biom format. |
| biom_shape-methods | The matrix dimensions of a 'biom-class' object. |
| colnames-methods | Method extensions to 'colnames' for 'biom-class' objects. |
| header-methods | Extract the header from a 'biom-class' object as a list. |
| make_biom | Create a 'biom-class' from 'matrix-class' or 'data.frame'. |
| matrix_element_type-methods | Access class of data in the matrix elements of a 'biom-class'... |
| ncol-methods | Method extensions to 'ncol' for 'biom-class' objects. |
| nrow-methods | Method extensions to 'nrow' for 'biom-class' objects. |
| observation_metadata-methods | Access observation (row) meta data from 'biom-class'. |
| read_biom | Read a biom-format file, returning a 'biom-class'. |
| read_hdf5_biom | Read in a biom-format vs 2 file, returning a 'list'. |
| rownames-methods | Method extensions to 'rownames' for 'biom-class' objects. |
| sample_metadata-methods | Access meta data from 'biom-class'. |
| show-methods | Method extensions to show for biom objects. |
| write_biom | Write a biom-format v1 file, returning a 'biom-class'. |
