mvGSTsamples: mvGSTsamples: Sample objects for the mvGST package

In johnrstevens/mvGST: Multivariate and directional gene set testing

Description

This includes the following four objects:

obatoclax.pvals	a matrix with rows for p-values and columns for contrasts,
	based on GSE36149 data from NCBI GEO
parathyroid.pvals	a matrix with rows for p-values and columns for contrasts,
	based on parathyroidGenesSE data from parathyroidSE package
obatoclax.mvGST	object returned by profileTable run on obatoclax.pvals
parathyroid.mvGST	object returned by profileTable run on parathyroid.pvals

Usage

data(mvGSTsamples)

Format

This object contains the four objects described above.

Details

See mvGST package vignette for details on these objects (including how they were constructed): vignette("mvGST")

The intended use for these objects is to demonstrate the methods coded in the mvGST package.

Value

The name of the data set specified.

References

Love M., "parathyroidSE: SummarizedExperiment for RNA-Seq of primary culture parathyroid tumors by Haglund et al., J Clinical Endocrinol Metab 2012." R package version 1.2.0.

Urtishak K.A., Edwards A.Y., Wang L.S., Hudome A., et al. (2013), "Potent obatoclax cytotoxicity and activation of triple death mode killing across infant acute lymphoblastic leukemia," Blood 121(14):2689-703.

Examples

data(mvGSTsamples)
head(obatoclax.pvals)
head(parathyroid.pvals)
obatoclax.mvGST
parathyroid.mvGST

# See package vignette for discussion of these objects: 
#    vignette("mvGST")

johnrstevens/mvGST documentation built on May 7, 2019, 10:51 p.m.