In jokergoo/HGNC: Convert Gene IDs

Convert Gene IDs

Author: Zuguang Gu ( [e-mail] )

Date: r Sys.Date()

Package version: r installed.packages()["HGNC", "Version"]

---

This package only supports gene ID conversion between gene symbol, Entrez IDs, Ensembl IDs and RefSeq IDs, and only avaible for human.

The function accepts three arguments which are:

• id: a list of gene IDs;
• from: the ID type for the input gene IDs. By default it is inferred from the input gene ID ( only the first one of id);
• to: the ID type that user wants to convert to.

In following example, we convert three genes from gene symbol to Ensembl IDs:

library(HGNC)
ids = c("TP53", "TP63", "TP73")
id_convert(ids, to = "Ensembl")

plot(1)

Session info

sessionInfo()

jokergoo/HGNC documentation built on May 6, 2019, 11:33 a.m.